HsaEX1033855 @ hg38
Exon Skipping
Gene
ENSG00000232347 | RP11-488L18.8
Description
NA
Coordinates
chr1:247200067-247210993:-
Coord C1 exon
chr1:247210691-247210993
Coord A exon
chr1:247202016-247202095
Coord C2 exon
chr1:247200067-247200193
Length
80 bp
Sequences
Splice sites
3' ss Seq
AGACATATTCTCAAATGCAGGTG
3' ss Score
6.12
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
CCCAGCGTCCGATCACATCCTCCGTCACTCAGGGACTGAGGGGGCGGGGCCTGGAGCCCTATCCAATCAGGGGCGCTGACGTAGGAACCGTCCAATCGGGCGTGCAGCCGGACAGAAGGGCGCGGCTTCCGGGATCTGGCGGGGCCTTCGTCTCTCCTGCCAGCCTCAGCTGGGTCGTCTTCTGTGCTCGGCGTGCTTTGCTCGGGGAAGCTCAGGTGGCCGCCACAGCCTCTTGCCCTCTGACCTGCAGGTATCAGGAGATCCATAGCTAAGCAGCCTGGACACCCGGGAAGCTGGGAAATG
Seq A exon
GTGTGATTTGTCCAGATAATCTCACCTGAGAAGGAATCCCAGAGAAGAAGGAAGAAGAGGAAGAAATGGCTGGTTCTCAG
Seq C2 exon
GGACTGTTGATATTCAGGGATGTGGCCATAGAATTCTCTCCGGAGGAGTGGAGCTATCTGGACCCTGCTCAGCAGAATCTGTATAGGGACGTGATGTTAGAAAACTACAGAAACCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000232347_MULTIEX1-2/4=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGCTCGGGGAAGCTCAG
R:
TGAGCAGGGTCCAGATAGCTC
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains