HsaEX1033856 @ hg38
Exon Skipping
Gene
ENSG00000232347 | RP11-488L18.8
Description
NA
Coordinates
chr1:247182556-247210993:-
Coord C1 exon
chr1:247210691-247210993
Coord A exon
chr1:247200067-247200193
Coord C2 exon
chr1:247182556-247191014
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGTGTTTTTTCTTTGCCAGGGA
3' ss Score
9.25
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
CCCAGCGTCCGATCACATCCTCCGTCACTCAGGGACTGAGGGGGCGGGGCCTGGAGCCCTATCCAATCAGGGGCGCTGACGTAGGAACCGTCCAATCGGGCGTGCAGCCGGACAGAAGGGCGCGGCTTCCGGGATCTGGCGGGGCCTTCGTCTCTCCTGCCAGCCTCAGCTGGGTCGTCTTCTGTGCTCGGCGTGCTTTGCTCGGGGAAGCTCAGGTGGCCGCCACAGCCTCTTGCCCTCTGACCTGCAGGTATCAGGAGATCCATAGCTAAGCAGCCTGGACACCCGGGAAGCTGGGAAATG
Seq A exon
GGACTGTTGATATTCAGGGATGTGGCCATAGAATTCTCTCCGGAGGAGTGGAGCTATCTGGACCCTGCTCAGCAGAATCTGTATAGGGACGTGATGTTAGAAAACTACAGAAACCTGGTCTCCCTGG
Seq C2 exon
CTGTTTCTTCTCATTTCACCCAAGACCTCTTGCCAGAGCATGGTATAAAAGATTCATTTCAAAAAGTGATACTGAGAAGATATGGAAGCTATGGCATTGAGAATTTACAATTAAAGAAAGATTGGGAAAGTGTGGGTGAATCTAAGGTGCAGAAAGAATGTTGTAATGGACTTAACCAATCTTTATCAACTACACATACCAAAATCTTTCAATTTAATAAATGTGTGAAAGTCTTTAGTAAATCGTCAAATCTAAATAGACATAAGATAAGACATACTGGAGAGATATCTTCCAACTGTAAAGAATGTGACAATTCCTTTTACATATCCTCAGTTCTAACTCCACTTCAGAGAATCCACACTGCAGAGAAATCCTACAAGTGTAAACAATGTGGGAAAGCCTTTAGGCACTGCTCATGCTTTCTTGAACATGAGACAATTCATAATGAAGAGAAACATTACAAATGTAAAGAATGTGGAAAAGTCTTTAAATCCTTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000232347_MULTIEX1-3/4=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGCTCGGGGAAGCTCAG
R:
GCACCTTAGATTCACCCACACT
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains