HsaEX1033902 @ hg38
Exon Skipping
Gene
ENSG00000240291 | RP11-499P20.2
Description
NA
Coordinates
chr10:18542069-18545651:-
Coord C1 exon
chr10:18545465-18545651
Coord A exon
chr10:18544324-18544346
Coord C2 exon
chr10:18542069-18542177
Length
23 bp
Sequences
Splice sites
3' ss Seq
CTATTTATTGTATCCATAAGGAT
3' ss Score
4.1
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GATCTAATGTTTTAATTTGTAAAGTGTACAAGTCATTTTTAATGTTAAAAATTAGTGAATCTAACAAAAGGAATAAATTAGCAATATTTGATGTGGTTATGAAAAGTTGTTTTTGTTTCTAGGTTCCTAGTTTCTTAAGGATTCAGGGCATGGGAAGTAAAACATTGACTATGTGCCAATAATGGAG
Seq A exon
GATTGCAAGGTCTCTTGGATCAG
Seq C2 exon
GTTGTCACCAGGCTGGAGTGCATTGGTACAGTCACGGTTCACTGCAGCCTCCACCTCCTGGGCTCAAGGGATCCTCCTATCTCAGCCTCCCAAGTAGCTGGGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000240291-'0-4,'0-3,1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTCAGGGCATGGGAAGT
R:
GTGGAGGCTGCAGTGAACC
Band lengths:
104-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains