HsaEX1034080 @ hg38
Exon Skipping
Gene
ENSG00000237781 | RP11-54A4.2
Description
NA
Coordinates
chr1:150556608-150557724:-
Coord C1 exon
chr1:150557693-150557724
Coord A exon
chr1:150557290-150557324
Coord C2 exon
chr1:150556608-150556943
Length
35 bp
Sequences
Splice sites
3' ss Seq
ATGTCTCACCTTTCCCGCAGGAC
3' ss Score
12.17
5' ss Seq
CCAGTACGC
5' ss Score
3.88
Exon sequences
Seq C1 exon
CCAGGAGATGTTGCGTTGAGTGCAGAGTTCAG
Seq A exon
GACGCTGAGCATGCAGAGTGTCCCACTCGTTTCCA
Seq C2 exon
ATCATCTGGGGAGAAGAGAAGATAATGAATATGTGGGGGTGGCCAGAAGAGGATGCCACCAGCTCTCTCTCCCATCTTGACAACCACAGCTCTGCCCAGAGGGAACAGCCTCCCTCCCCAGCATTCAGCTGCCCCTGGCCCCAGGCTCACATAGACATCCACAGGCTGGGTGGTGGGGCCTTCAGCCGACAGACTCTCCCCTTTGCCCTCCTCCCTGGGAGGACGGTTATATCGAAAGACGGTCCCGCCGGCCCTGTAGGACCCAGGGGGATCCACAGCCCAGTTCCCATTGATGATGGACCGGCCCCCAGGGCCACGAAGTGCTGCGGGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237781-'0-1,'0-0,1-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCGTTGAGTGCAGAGTT
R:
GCAGAGCTGTGGTTGTCAAGA
Band lengths:
119-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains