HsaEX1034472 @ hg38
Exon Skipping
Gene
ENSG00000283294 | RP11-681B3.4
Description
NA
Coordinates
chr18:14341522-14342505:+
Coord C1 exon
chr18:14341522-14341795
Coord A exon
chr18:14341977-14342127
Coord C2 exon
chr18:14342225-14342505
Length
151 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCGGTTTCTTTCTAGCTC
3' ss Score
9.48
5' ss Seq
CTGGTACAG
5' ss Score
3.91
Exon sequences
Seq C1 exon
CTCAACTGATCTCCTGGGATCTCTACTAAGATGTTGGCAGCCCGGTCAGCTGGTCTGGCCCTGGACGTGCCTTCAGGGTCTGGTTATGCTTCATGACCTGCATTGTGGTCAGTGGTAAGCAGCACCTGCTTCTAGCTTTACTGTTGGGTCAGATTTTATCCCCACTCCAGCTCTGCAGTGTGGCTGCTTCTTGATTCATCCATGGACCCTGCACGAAATTGCCCCATGTTACTGTTTGTGCATCACTGAGGAAGGAAGCATGAAGGACGCACAG
Seq A exon
CTCATCTCACTCTGGTAATGTCTTTGATTACCACCACCATCTGACCTGGTCTTATGATCTGTTAGCTTCCTTCATCAGATGTGAGCACCAGGATGGCAGGGGCCTCATCTGTCCTGTTCCTCCTGTGGCCTGGGTCCTAGCACCATGTCTG
Seq C2 exon
CCATTTTGCAGACTTTGATCACAGTGAAACGTTCCATGGGAACTTGGGCCATGAGAAACATCCTTCCTAACCACGTGACTGCAGAAACATCCTTATCACATCCTCCTGGGCAAAGGCCCAACAGCCTGACTGCAGGGACATCCTTGCCATATCCTGCTGGGCAGCAAGCTCTACCACCCAGATCCCTCCCTCCCAGTCCCATGATTACCCCAGCCTGTGAGTGGCAGTTGGTTCTGGCACTAAGCTGGTTTCCTCCTCCCCAGGGTTTTGCTGGCAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000283294-'29-28,'29-27,30-28
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAAGCATGAAGGACGCA
R:
ACTCACAGGCTGGGGTAATCA
Band lengths:
246-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains