HsaEX1034623 @ hg38
Exon Skipping
Gene
ENSG00000214776 | RP11-726G1.1
Description
NA
Coordinates
chr12:9500701-9511842:+
Coord C1 exon
chr12:9500701-9500815
Coord A exon
chr12:9503032-9503141
Coord C2 exon
chr12:9511684-9511842
Length
110 bp
Sequences
Splice sites
3' ss Seq
TAATACTTAATTGACTGCAGGTG
3' ss Score
5.56
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TTGGGGAAAGATGGCTGTGTCTCCAAGTTCATTAACACAGGTGCTTTTGAGTTAAATCGGTAAGGATACTGGAGTTTCCTCAAAGTGCATGCTCTTGTTACAGAGAACGGAACAG
Seq A exon
GTGTGCAGCTTACAGGCTCCAAGTACATATACATAGACTCATCAGTGGTGAAGATTAGTTTTGAGAATATGGATATGTCCTACAAACAGGGACTCCCTTATTTTGGCCAG
Seq C2 exon
ATTAAATTGCTTGATCCAGACAACTCTCCAATCCCAAATGAAGTTGTCCAGTTGCATCTGAAGGACAAAATCGTGGGAAACTACACCACAGATGTAAATGGCATCGCTCAGTTTTTCTTGGACACATATACGTTTACATACCCAAATATCACTTTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214776_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0183514=A2M_N=FE(23.9=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENST00000640129fB24799
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGGAAAGATGGCTGTGTC
R:
ATGTGTCCAAGAAAAACTGAGCG
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains