HsaEX1034632 @ hg38
Exon Skipping
Gene
ENSG00000214776 | RP11-726G1.1
Description
NA
Coordinates
chr12:9565092-9569202:+
Coord C1 exon
chr12:9565092-9565303
Coord A exon
chr12:9567490-9567567
Coord C2 exon
chr12:9569058-9569202
Length
78 bp
Sequences
Splice sites
3' ss Seq
CACCTGCCTTCTGCCCTTAGGCT
3' ss Score
11.16
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATAATGTCATCTACTGGGAAAGAGAAAGGAAACCCAAGACAGAAGAATTTCCATCCTTTATTCCCTGGGCACCTTCTGCTCAGACTGAGAAGAGTTGCTACGTGCTGTTGGCTGTCATTTCCCGGAAAATTCCTGACCTCACCTATGCTAGTAAGATTGTGCAGTGGCTTGCCCAACGGATGAATTCCCATGGAGGCTTTTCTTCCAACCAG
Seq A exon
GCTCCGGTAGATTGCAAACGACCTGCTTTCTTTGTGATCCCGGCTGCATTCGGACCCCTGTCAGACAGTAAATCCCAA
Seq C2 exon
GCTCCCGTAGATTGCAAAGGACATGCTTTCTTTGTGATCCCGGGCTGCATTCGGACCCCTGTCGGATAGTGAATTCCAAATAATGTACCTACCGTCGGCAGATCTGAGCTTTCTTCTTGGACACCTAATACCCACAGTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214776_MULTIEX5-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(58.4=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENST00000640129fB24799
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCTGTCATTTCCCGGAA
R:
TTCACTATCCGACAGGGGTCC
Band lengths:
179-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains