HsaEX1035694 @ hg38
Exon Skipping
Gene
ENSG00000124782 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]
Coordinates
chr6:7211573-7226656:+
Coord C1 exon
chr6:7211573-7211709
Coord A exon
chr6:7218968-7219034
Coord C2 exon
chr6:7226467-7226656
Length
67 bp
Sequences
Splice sites
3' ss Seq
AATGCTTTTTAAAATTTTAGGGC
3' ss Score
8.81
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATGGTAGAAGACGGGCAGTCAGGTGACTTGGAGAAGAAAGCTGATGAAGTCTTTCACTGCCCAGTATGTTTCAAGGAGTTTGTTTGCAAGTATGGACTGGAGACCCACATGGAGACCCATTCAGATAACCCACTAAG
Seq A exon
GGCCTCACGGTGGCTCATGTCTGTAATCTCAGTACTTTGGGAGGCCGAAGCAAGGGGATCGCTTGAG
Seq C2 exon
ATGTGACATTTGTTGTGTCACCTTTCGAACACATCGAGGACTGCTGCGTCACAACGCGCTTGTCCACAAACAACTTCCCAGGGATGCAATGGGCAGACCTTTCATACAGAACAACCCTTCAATTCCTGCTGGCTTCCACGACTTAGGATTCACGGACTTCTCCTGTAGGAAGTTTCCTCGCATTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124782-'49-31,'49-30,50-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000379938fB24917
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGAGACCCACATGGAGA
R:
AAGCCAGCAGGAATTGAAGGG
Band lengths:
178-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains