HsaEX1035876 @ hg38
Exon Skipping
Gene
ENSG00000143171 | RXRG
Description
retinoid X receptor gamma [Source:HGNC Symbol;Acc:HGNC:10479]
Coordinates
chr1:165419870-165428966:-
Coord C1 exon
chr1:165428719-165428966
Coord A exon
chr1:165424751-165424808
Coord C2 exon
chr1:165419870-165420014
Length
58 bp
Sequences
Splice sites
3' ss Seq
ATCCTGCCTTCCTCACCCAGGAC
3' ss Score
9.2
5' ss Seq
CGCGTAAGT
5' ss Score
9.93
Exon sequences
Seq C1 exon
GCTCCCCTGGCCACACTGGCTCTACATCCATGAGCCCATCAGCAGCCTTGTCCACAGGGAAGCCAATGGACAGCCACCCCAGCTACACAGATACCCCAGTGAGTGCCCCACGGACTCTGAGTGCAGTGGGGACCCCCCTCAATGCCCTGGGCTCTCCATATCGAGTCATCACCTCTGCCATGGGCCCACCCTCAGGAGCACTTGCAGCGCCTCCAGGAATCAACTTGGTTGCCCCACCCAGCTCTCAG
Seq A exon
GACTGGTCTGAGAGGGATTCATGATGGAAGCATGTTCATTCTGTGACCTGGTTCTCGC
Seq C2 exon
CTAAATGTGGTCAACAGTGTCAGCAGTTCAGAGGACATCAAGCCCTTACCAGGGCTTCCCGGGATTGGAAACATGAACTACCCATCCACCAGCCCCGGATCTCTGGTTAAACACATCTGTGCCATCTGTGGAGACAGATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143171_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.631 A=1.000 C2=0.250
Domain overlap (PFAM):
C1:
PF118253=Nuc_recep-AF1=PU(67.6=90.4)
A:
NA
C2:
PF118253=Nuc_recep-AF1=PD(30.6=69.4),PF0010513=zf-C4=PU(15.7=22.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATCAACTTGGTTGCCCCA
R:
TTTAACCAGAGATCCGGGGCT
Band lengths:
144-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains