HsaEX1036078 @ hg38
Exon Skipping
Gene
ENSG00000133812 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr11:10016679-10020263:-
Coord C1 exon
chr11:10020163-10020263
Coord A exon
chr11:10016953-10016979
Coord C2 exon
chr11:10016679-10016779
Length
27 bp
Sequences
Splice sites
3' ss Seq
TCTCCCGTGTTATTGTGCAGCTT
3' ss Score
8.56
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TAGCAGTTAAACTCTGCCATTTTGCCTCTTACTGCACCTGCGTGAGCTCACTCACCCAACTCCTGAGCTCTTATCAGGAAGCTGCCGATCACCAATTTCAG
Seq A exon
CTTTGAATGGATGTTGGGCTACAGAAG
Seq C2 exon
GCACGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCGAGGCGGGCAGCTCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133812-'25-24,'25-23,26-24
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(27.6=85.4)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENST00000256190fB6121
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCCAACTCCTGAGCTCT
R:
GATCTCCTGACCTCGTGAGCT
Band lengths:
123-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains