HsaEX1036079 @ hg38
Exon Skipping
Gene
ENSG00000133812 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr11:9993921-9998379:-
Coord C1 exon
chr11:9998266-9998379
Coord A exon
chr11:9996381-9996752
Coord C2 exon
chr11:9993921-9993998
Length
372 bp
Sequences
Splice sites
3' ss Seq
ATAATGTGTACTTAAAATAGCAT
3' ss Score
2.95
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTAGATGTAATCATAGCAGATTTGGATGGAGGCACTATTAAAATTCCCGAATGTATTCACCTCTCTTCCCTCCCAGAACCACTTCTACATCAGACTCAATCAGCTCTTTCTTTG
Seq A exon
CATATAGAACCTGTCATTGCTCAACTATCATCTAAGAAAATACTGGGTTTAAGAAGGCGAGTTTGGCAGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCAGATCACGAGGTCAGGAGTTCGAGACCAGCCTGTCCAACATGGTGAAACCCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCGCACGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATAGCATGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGACTGCGCCACTGCACTCCAGCCTGGGTGACAGAGCTCGACTCCATCTCAAAAAACAAAATAAACAAAAAAAGAAG
Seq C2 exon
ATTTTACACCCAGATTTGGAAGTAGCAGATCATGCTTTTCCTCCTCCACGAACAGCTTTATCCCACTCAAAAATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133812-'32-31,'32-30,33-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.326 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(5.5=26.3)
A:
NO
C2:
PF0345514=dDENN=PU(0.1=0.0)
Main Inclusion Isoform:
ENST00000256190fB25152
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTAATCATAGCAGATTTGGATG
R:
CAGCATTTTTGAGTGGGATAAAGCT
Band lengths:
190-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains