HsaEX1036081 @ hg38
Exon Skipping
Gene
ENSG00000133812 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr11:9846956-9850218:-
Coord C1 exon
chr11:9850023-9850218
Coord A exon
chr11:9847742-9847803
Coord C2 exon
chr11:9846956-9847083
Length
62 bp
Sequences
Splice sites
3' ss Seq
CTCCCACGGGAAATTGGAAGCTC
3' ss Score
-3.63
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
CCCAAGATTCTTAGACCTGCTCTGCTGCCAGGAGAAGAAATTGTCTGTGAGGGTCTTCGAGTCTTGCTGGATCCTGATGGAAGAGAAGAAGCTACTGGAGGTCTTCTTGGAGGCCCTCAGCTCCTGCCAGCAGAAGGAGCCTTGTTCCTCACCACATACAGAATTCTCTTCAGAGGAACACCCCATGATCAGTTAG
Seq A exon
CTCTTCAAGGGAGGTCTTGAGTGTGCTACTTTTTTTCTAGACTCTCATCTTCATAACCTCAG
Seq C2 exon
TGGGTGAGCAGACAGTTGTGCGGAGCTTTCCCATTGCCTCCATCACCAAGGAGAAGAAGATTACAATGCAGAACCAGCTACAGCAGAACATGCAAGAAGGACTGCAGATCACATCAGCATCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133812_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=0.833 C2=0.070
Domain overlap (PFAM):
C1:
PF0289315=GRAM=PU(74.7=98.5)
A:
PF0289315=GRAM=PD(2.9=28.6)
C2:
PF0289315=GRAM=PD(24.1=48.8)
Main Inclusion Isoform:
ENST00000256190fB25154
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGGTCTTCTTGGAGGC
R:
TGATGGAGGCAATGGGAAAGC
Band lengths:
148-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains