HsaEX1036131 @ hg38
Exon Skipping
Gene
ENSG00000168079 | SCARA5
Description
scavenger receptor class A member 5 [Source:HGNC Symbol;Acc:HGNC:28701]
Coordinates
chr8:27907148-27909743:-
Coord C1 exon
chr8:27909663-27909743
Coord A exon
chr8:27907440-27907554
Coord C2 exon
chr8:27907148-27907246
Length
115 bp
Sequences
Splice sites
3' ss Seq
AAGTGTTTGCTGATTCTAAGTCT
3' ss Score
0.7
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
GGCCACCGGGACCCAAAGGTGATCAGGGGGATGAAGGAAAGGAAGGCAGGCCTGGCATCCCTGGATTGCCTGGACTTCGAG
Seq A exon
TCTCCAGCATGCTGAAGGGCAAAGGGACACCCCCAAAGGAATAGGCACCCCCACCGTCACTCACAACAGCACTGGACCTTTCTAGCAGGAGGATCCCAAGCCTGATGGATACAAG
Seq C2 exon
GTCTGCCCGGGGAGAGAGGTACCCCAGGATTGCCCGGGCCCAAGGGCGATGATGGGAAGCTGGGGGCCACAGGACCAATGGGCATGCGTGGGTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168079_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(49.1=100),PF0139113=Collagen=PU(10.0=21.4)
A:
PF0139113=Collagen=PD(20.5=53.3)
C2:
PF0139113=Collagen=PD(45.5=73.5),PF0139113=Collagen=FE(55.0=100)
Main Inclusion Isoform:
ENST00000354914fB25197
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGATCAGGGGGATGAAGG
R:
CTTTGAACCCACGCATGCCC
Band lengths:
164-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains