HsaEX1036404 @ hg38
Exon Skipping
Gene
ENSG00000101251 | SEL1L2
Description
SEL1L2 ERAD E3 ligase adaptor subunit [Source:HGNC Symbol;Acc:HGNC:15897]
Coordinates
chr20:13919021-13931771:-
Coord C1 exon
chr20:13931603-13931771
Coord A exon
chr20:13928135-13928316
Coord C2 exon
chr20:13919021-13919123
Length
182 bp
Sequences
Splice sites
3' ss Seq
CCCACCTCCCTGCAACACAGAAG
3' ss Score
3.87
5' ss Seq
AAAGTTAGT
5' ss Score
4.24
Exon sequences
Seq C1 exon
GTATCAGTGAACGAAATCAAACAATATTTATCACACATATTGGAACAAAGAACATCTAGTAATGTAATCAATAAAAGAGAAAATCTCCTGGAGAAAAAGAAGAATCAACGTAAAATAAGAATAAAAGGAATTCAAAATAAAGATATCTTGAAGAGAAATAAGAATCATT
Seq A exon
AAGCCTGGTGTCAGCTGATGCCAAGTCTTCAAGGATGGAAAGACATTGCCCTACAGAACTAGGGAGAGGAACGTTGACATTTTGTTTTTGAAAGGGTGAGAAGAAAAGAACAGGAGAAGAACTATGAAAACAGCAGATGTGAGGAGCAAGAAAGATGGTGATTGGCTGCGCTAAACTGAAAA
Seq C2 exon
TACAAAAGCAAGCAGAGAAAAATTTTACAGATGAAGGAGACCAGCTATTTAAGATGGGCATCAAGGTTCTCCAGCAGTCTAAAAGCCAAAAACAAAAAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101251_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATAAAAGAGAAAATCTCCTGGAG
R:
TCTTTTTGTTTTTGGCTTTTAGACTG
Band lengths:
202-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains