HsaEX1036443 @ hg38
Exon Skipping
Gene
ENSG00000075213 | SEMA3A
Description
semaphorin 3A [Source:HGNC Symbol;Acc:HGNC:10723]
Coordinates
chr7:84194475-84307292:-
Coord C1 exon
chr7:84307207-84307292
Coord A exon
chr7:84295042-84295131
Coord C2 exon
chr7:84194475-84194668
Length
90 bp
Sequences
Splice sites
3' ss Seq
AATCCTTTTATATCCCACAGGCT
3' ss Score
9.61
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGTATTTAAAGTGCCCAGGTACTTACAATAACAAGTTGGACTGAACACATTGTATCTCAGGAATTAAGAATTTTTCCTAAAAGAAG
Seq A exon
GCTGAGATCATGCACATCTGAGATGTGTTAGTTGAAATTCCACACAGTCTTCAATTGCCAAGTTTGGATGGAATGAACATAATACTAAAA
Seq C2 exon
TTTCCAGATTGTTTGAACTTCTCTGGCCGCACAATACAGGAAGGAAGACTAAAGCAGCAAAGGGACCTACAGCGTCTGCAGCATGGGCTGGTTAACTAGGATTGTCTGTCTTTTCTGGGGAGTATTACTTACAGCAAGAGCAAACTATCAGAATGGGAAGAACAATGTGCCAAGGCTGAAATTATCCTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075213_MULTIEX2-3/4=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCCCAGGTACTTACAATAACA
R:
TCCTAGTTAACCAGCCCATGC
Band lengths:
178-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains