HsaEX1036448 @ hg38
Exon Skipping
Gene
ENSG00000012171 | SEMA3B
Description
semaphorin 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr3:50267558-50269349:+
Coord C1 exon
chr3:50267558-50267769
Coord A exon
chr3:50268193-50268286
Coord C2 exon
chr3:50269161-50269349
Length
94 bp
Sequences
Splice sites
3' ss Seq
GCCCCTCTTTGATTCCTCAGGGG
3' ss Score
9.53
5' ss Seq
CAGGTCTTG
5' ss Score
1.23
Exon sequences
Seq C1 exon
AAACTTTACGGCACGGCGGGCGGTGCGTGGGGCGGTGGCTGGCCTGGTGGGGGCGGGGGCTGCTTCTTAAAGGAGCCGTCAGAGGGTCCCCAGCGGCCCCAGGGTGGGAAGGGGCCAGAGTGGAGAGATGCTGCTGCGGAAGTCCTCGGTGGAGTGTGAGAAGGCAGCCAGTGTTGGCCTGGAAGACCTCTAGAACCTGAGAAGAGGCAGCG
Seq A exon
GGGTGTGGAGAGAGAGCCCTCAAGCTCAAATGCAGAGGCTGCTTCAGCTGGGTTGGGAGCAGTCCCCAAGTCAGAGGCTGAGGCTTCTGCCCAG
Seq C2 exon
ATCCTGGGGCAGAGTCCAGGGCAGCTCAAGGCTCCTCCACACACACACCCGCTGAACCCTGAGCACCCTGAGCTGCTGAGATGGGGCGGGCCGGGGCTGCCGCCGTGATCCCGGGCCTGGCCCTGCTCTGGGCAGTGGGGCTGGGGAGTGCCGCCCCCAGCCCCCCACGCCTTCGGCTCTCCTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000012171_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAAGGAGCCGTCAGAGGGT
R:
CTTGAGCTGCCCTGGACTCT
Band lengths:
176-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains