HsaEX1036538 @ hg38
Exon Skipping
Gene
ENSG00000122545 | SEPT7
Description
septin 7 [Source:HGNC Symbol;Acc:HGNC:1717]
Coordinates
chr7:35801039-35832900:+
Coord C1 exon
chr7:35801039-35801270
Coord A exon
chr7:35815308-35815312
Coord C2 exon
chr7:35832798-35832900
Length
5 bp
Sequences
Splice sites
3' ss Seq
TGGGGTGTCACTGCCTCTAGTAG
3' ss Score
3.25
5' ss Seq
GATGTTTTG
5' ss Score
-18.65
Exon sequences
Seq C1 exon
GACGGAGGAGGGAGCGGGAGTCGAGCGAGAGCCTGTGGAGGAGTCCGCCTGCTGTAGCGTGCGTAAGCAAGGCAGCTACGCCGGGCGGCTACGCTGCGGAATCGGCGTAGGCGCCTTTGGAGAATCGGCGGGCTGCGCTCCGCTGGGGCTGGTCGCGGAGGGGGGGAGGGGATGTCGGTCAGTGCGAGATCCGCTGCTGCTGAGGAGAGGAGCGTCAACAGCAGCACCATGG
Seq A exon
TAGAT
Seq C2 exon
CAACAGAAGAACCTTGAAGGCTATGTGGGATTTGCCAATCTCCCAAATCAAGTATACAGAAAATCGGTGAAGAGAGGTTTTGAATTCACGCTTATGGTAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122545-MICROEX1-3/6
Average complexity
MIC-M
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.651 A=1.000 C2=0.045
Domain overlap (PFAM):
C1:
PF0073513=Septin=PU(3.3=42.9)
A:
NA
C2:
PF0073513=Septin=PU(32.3=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTCGGTCAGTGCGAGATC
R:
GGGAGATTGGCAAATCCCACA
Band lengths:
106-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains