HsaEX1037584 @ hg38
Exon Skipping
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4 member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr2:161854970-161863062:+
Coord C1 exon
chr2:161854970-161855130
Coord A exon
chr2:161860614-161860719
Coord C2 exon
chr2:161862874-161863062
Length
106 bp
Sequences
Splice sites
3' ss Seq
TATTATTTCCTTTATTTCAGATT
3' ss Score
10.41
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGGTTGAAGTTTGAAGAAGATGTGGAAGATGGAGGAGAAAGGTGGAGCAAGCCTTATGTGGCTACTCTTTCATTGCACAGCTTGTTTGAATTGAGAAGTTGTATTCTGAATGGAACTGTGTTGCTGGACATGCATGCCAACACTTTAGAAGAAATTGCAG
Seq A exon
ATTAACCCAGGGGTATTATAACTACTGATCTCCAAAGAACTGAAAAATAGATTTAAATATTATTCTATAGTATCACACATTTTCAGAATTGGAAGGGACCTTTGAG
Seq C2 exon
ATATGGTTCTTGACCAACAAGTGAGCTCAGGTCAGCTGAATGAAGATGTACGCCATAGGGTCCATGAGGCATTGATGAAACAGCATCATCATCAGAATCAGAAAAAACTCACCAACAGGATTCCCATTGTTCGTTCCTTTGCTGATATTGGCAAGAAACAGTCAGAACCAAATTCCATGGACAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290_MULTIEX4-1/4=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.580
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(18.1=85.5)
A:
PF075658=Band_3_cyto=PD(0.1=0.0)
C2:
PF075658=Band_3_cyto=FE(24.2=100)
Main Inclusion Isoform:
ENST00000375514fB26120
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGAAAGGTGGAGCAA
R:
TGGGAATCCTGTTGGTGAGTT
Band lengths:
257-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains