HsaEX1037606 @ hg38
Exon Skipping
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4 member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr3:27404830-27406914:-
Coord C1 exon
chr3:27406807-27406914
Coord A exon
chr3:27405990-27406021
Coord C2 exon
chr3:27404830-27404963
Length
32 bp
Sequences
Splice sites
3' ss Seq
GGGCTGGCTTTTCTGGATAGTAC
3' ss Score
3.4
5' ss Seq
ATGGTAAAC
5' ss Score
4.68
Exon sequences
Seq C1 exon
GGTCTCACTGTGTCACTCAGGCTAGAGTGCAGTGGCATGATCTCAGCTCTCTGTAGTTTTGACCTCACTGGACTTCCCTCATAACCTCCGGAGTAGCTGGGACTATAG
Seq A exon
TACGTTCCAGTTGACCTTGATGTTTGTATATG
Seq C2 exon
AGTGCAATAGAGTCTCTTTTTGGAGCATCATTAACTGGGATTGCCTATTCATTGTTTGCTGGGCAACCTCTAACAATATTGGGGAGCACAGGTCCAGTTCTAGTGTTTGAAAAAATTTTATATAAATTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867-'46-40,'46-39,47-40
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
NA
A:
PF0095516=HCO3_cotransp=PD(7.0=45.5)
C2:
PF0095516=HCO3_cotransp=FE(22.0=100)
Main Inclusion Isoform:
ENST00000425128fB26139
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACCTCCGGAGTAGCTGGG
R:
TGGACCTGTGCTCCCCAATAT
Band lengths:
124-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains