HsaEX1037830 @ hg38
Exon Skipping
Gene
ENSG00000184347 | SLIT3
Description
slit guidance ligand 3 [Source:HGNC Symbol;Acc:HGNC:11087]
Coordinates
chr5:168722933-168724484:-
Coord C1 exon
chr5:168724416-168724484
Coord A exon
chr5:168723632-168723711
Coord C2 exon
chr5:168722933-168723004
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTGGATGTTTATCCCCGCAGGGA
3' ss Score
9.11
5' ss Seq
GGAGTAAAT
5' ss Score
-0.17
Exon sequences
Seq C1 exon
GTACCTGGAAGGAAACCACCTAACAGCCGTGCCCAGAGAGCTGTCCGCCCTCCGACACCTGACGCTTAT
Seq A exon
GGAAGCTCGAGGTTGCAGCTGGCAGAGGACTGCACCCCCACCAACCTCAGTCCTCCTAAGACAGAACCTGATAAGACGGA
Seq C2 exon
TGACCTGAGCAACAACAGCATCAGCATGCTGACCAATTACACCTTCAGTAACATGTCTCACCTCTCCACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184347-'52-71,'52-70,53-71
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(52.3=100)
A:
NO
C2:
PF127992=LRR_4=PD(38.6=68.0),PF138551=LRR_8=PU(8.2=20.0)
Main Inclusion Isoform:
ENST00000332966fB26285
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGAAACCACCTAACAGCC
R:
AGAGTGGAGAGGTGAGACATGT
Band lengths:
135-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains