HsaEX1038575 @ hg38
Exon Skipping
Gene
ENSG00000167182 | SP2
Description
Sp2 transcription factor [Source:HGNC Symbol;Acc:HGNC:11207]
Coordinates
chr17:47927724-47928957:+
Coord C1 exon
chr17:47927724-47927820
Coord A exon
chr17:47927959-47928153
Coord C2 exon
chr17:47928936-47928957
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTCTGCAACTGTCCCCACAGGAA
3' ss Score
10.14
5' ss Seq
AAAGTGAGC
5' ss Score
5.89
Exon sequences
Seq C1 exon
GGGACAAACGCTTCGAGTGCGCCCAGTGTCAGAAGCGCTTCATGAGGAGTGACCACCTCACCAAGCATTACAAGACCCACCTGGTCACGAAGAACTT
Seq A exon
GAAGGGGCTCTGTTCCCTGTATTGTCCTCCTTCTGAAGCCCCTTGGCTCTGCCTTGGCCCTTCCCCTCACCACGAGCTCCCGGCCTGCCCAGACTGTGGACACTGGCCGTGCCCAATGAGACGTTCTAAACCAGGACGCGTGGGAACCCTTATTTCCAAAGGAAAAACATGCATTTCACTCCGTCGAGGAGCAAA
Seq C2 exon
TTGCCTGAGGCAAAATCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167182_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(54.2=38.2)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(54.2=38.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains