HsaEX1038586 @ hg38
Exon Skipping
Gene
ENSG00000170374 | SP7
Description
Sp7 transcription factor [Source:HGNC Symbol;Acc:HGNC:17321]
Coordinates
chr12:53326575-53345315:-
Coord C1 exon
chr12:53345114-53345315
Coord A exon
chr12:53335626-53335693
Coord C2 exon
chr12:53326575-53329420
Length
68 bp
Sequences
Splice sites
3' ss Seq
CCCCCCACCCCCCGGCTCAGCTC
3' ss Score
3.75
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
TGCATTGGGGAGCGGAGGATAAGAGAATGGGGGAGCTCTGAGATCCCTACTCCTCTCTGTGTGGGGTGATGGGGAAGAGAAAGGGCATGAGAGACTGGCAGGCTGGGGGCCAACGGGATGTTGGCACCGTCGGGACCTCGGGCACTGCAAGATCCGGAGGAAGAAGCTTGGATGCAGCCTCGAGAAAGCTACGGCGGAAGAG
Seq A exon
CTCTCTCCATCTGCCTGGCTCCTTGGGACCCGTTCCCCAGCCTCAGGATGGCGTCCTCCCTGCTTGAG
Seq C2 exon
GAGGAAGTTCACTATGGCTCCAGTCCCCTGGCCATGCTGACGGCAGCGTGCAGCAAATTTGGTGGCTCTAGCCCTCTGCGGGACTCAACAACTCTGGGCAAAGCAGGCACAAAGAAGCCGTACTCTGTGGGCAGTGACCTTTCAGCCTCCAAAACCATGGGGGATGCTTATCCAGCCCCCTTTACAAGCACTAATGGGCTCCTTTCACCTGCAGGCAGTCCTCCAGCACCCACCTCAGGCTATGCTAATGATTACCCTCCCTTTTCCCACTCATTCCCTGGGCCCACAGGCACCCAGGACCCTGGGCTACTAGTGCCCAAGGGGCACAGCTCTTCTGACTGTCTGCCCAGTGTCTACACCTCTCTGGACATGACACACCCCTATGGCTCCTGGTACAAGGCAGGCATCCATGCAGGCATTTCACCAGGCCCAGGCAACACTCCTACTCCATGGTGGGATATGCACCCTGGAGGCAACTGGCTAGGTGGTGGGCAGGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170374_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.286 C2=0.618
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAGCTTGGATGCAGCCT
R:
AGTACGGCTTCTTTGTGCCTG
Band lengths:
167-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains