HsaEX1039136 @ hg38
Exon Skipping
Gene
ENSG00000160408 | ST6GALNAC6
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:23364]
Coordinates
chr9:127890637-127894691:-
Coord C1 exon
chr9:127894512-127894691
Coord A exon
chr9:127893737-127893831
Coord C2 exon
chr9:127890637-127891043
Length
95 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTATATTTTCTTCAGGGC
3' ss Score
10.14
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GAGCAGCGGTCAGCAGTGTTCGTGATCCTCTTTGCCCTCATCACCATCCTCATCCTCTACAGCTCCAACAGTGCCAATGAGGTCTTCCATTACGGCTCCCTGCGGGGCCGTAGCCGCCGACCTGTCAACCTCAAGAAGTGGAGCATCACTGACGGCTATGTCCCCATTCTCGGCAACAAG
Seq A exon
GGCCTTCGCATGCAGAGTGTAGAGCCCGGGCTCTGGACACACCCTCACTAGGAAAGGGCACATTAGCAGGTGTCTGGAGACAGGTTAACACCTAA
Seq C2 exon
ACACTGCCCTCTCGGTGCCACCAGTGTGTGATTGTCAGCAGCTCCAGCCACCTGCTGGGCACCAAGCTGGGCCCTGAGATCGAGCGGGCTGAGTGTACAATCCGCATGAATGATGCACCCACCACTGGCTACTCAGCTGATGTGGGCAACAAGACCACCTACCGCGTCGTGGCCCATTCCAGTGTGTTCCGCGTGCTGAGGAGGCCCCAGGAGTTTGTCAACCGGACCCCTGAAACCGTGTTCATCTTCTGGGGGCCCCCGAGCAAGATGCAGAAGCCCCAGGGCAGCCTCGTGCGTGTGATCCAGCGAGCGGGCCTGGTGTTCCCCAACATGGAAGCATATGCCGTCTCTCCCGGCCGCATGCGGCAATTTGACGACCTCTTCCGGGGTGAGACGGGCAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160408_MULTIEX1-1/5=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.250 C2=0.062
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(15.1=68.3)
A:
NO
C2:
PF0077713=Glyco_transf_29=PD(75.1=97.8)
Main Inclusion Isoform:
ENST00000373142fB27018
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGGAGCATCACTGACGG
R:
CAGTGGTGGGTGCATCATTCA
Band lengths:
173-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains