HsaEX1039355 @ hg38
Exon Skipping
Gene
ENSG00000198648 | STK39
Description
serine/threonine kinase 39 [Source:HGNC Symbol;Acc:HGNC:17717]
Coordinates
chr2:168017043-168063570:-
Coord C1 exon
chr2:168063500-168063570
Coord A exon
chr2:168040499-168040623
Coord C2 exon
chr2:168017043-168017095
Length
125 bp
Sequences
Splice sites
3' ss Seq
TATTTCACTTAAAATTCTAGGTG
3' ss Score
8.23
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGCCCACCCAATGCTAATGAAGACTACAGAGAAGCTTCTTCTTGTGCCGTGAACCTCGTTTTGAGATTAAG
Seq A exon
GTGAAGAAATCTGGATAAAAAATTTATTGGGAAGGATTTCATGTTTTGAACTGTTGTCCAGTGAGGTTATATGGCAGTAATTTTCTCCAGTAGGGAATTCCTAAAGTTATCCCATTTTGAAGAAG
Seq C2 exon
AAACTCCAGAAAGGAACTTAATGACATACGATTTGAGTTTACTCCAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198648_MULTIEX2-8/13=7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.479 A=0.000 C2=0.368
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=PU(21.9=29.2)
A:
NO
C2:
PF122023=OSR1_C=FE(56.2=100)
Main Inclusion Isoform:
ENST00000355999fB27147
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCACCCAATGCTAATGAA
R:
TCTTCCTGGAGTAAACTCAAATCGT
Band lengths:
123-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains