HsaEX1039484 @ hg38
Exon Skipping
Gene
ENSG00000136854 | STXBP1
Description
syntaxin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11444]
Coordinates
chr9:127661102-127663353:+
Coord C1 exon
chr9:127661102-127661205
Coord A exon
chr9:127663015-127663086
Coord C2 exon
chr9:127663205-127663353
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTCTGCTTTCTCCTACTAGATT
3' ss Score
10.18
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
Exon sequences
Seq C1 exon
CTTGTCCAGATGCCCTGTTTAATGAACTGGTAAAATCCCGAGCAGCCAAAGTCATCAAAACTCTGACGGAAATCAATATTGCATTTCTCCCGTATGAATCCCAG
Seq A exon
ATTGCAAACTCCTTGAGGACATGGATGTTTTGGTCACTAATAGTTCCCAAGTGTTTAGCACATGGGCACATG
Seq C2 exon
GTCTATTCCTTGGACTCTGCTGACTCTTTCCAAAGCTTCTACAGTCCCCACAAGGCTCAGATGAAGAATCCTATACTGGAGCGCCTGGCAGAGCAGATCGCGACCCTTTGTGCCACCCTGAAGGAGTACCCGGCTGTGCGGTATCGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136854_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PD(28.0=93.3)
A:
PF0099518=Sec1=FE(4.0=100)
C2:
PF0099518=Sec1=PD(66.7=96.2)
Main Inclusion Isoform:
ENST00000637173fB27222
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTAAAATCCCGAGCAGC
R:
CCAGGCGCTCCAGTATAGGAT
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains