HsaEX1040343 @ hg38
Exon Skipping
Gene
ENSG00000168778 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr12:123690533-123692723:+
Coord C1 exon
chr12:123690533-123690674
Coord A exon
chr12:123690914-123691011
Coord C2 exon
chr12:123692658-123692723
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCTCCGTCACGCAGGTT
3' ss Score
8.71
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
Exon sequences
Seq C1 exon
GTGTCCCTGGCTGGGCAGTGTATGCAGAACGCCCCAGTGGCATTTCTTCACAATTTTGATGTTAAATGCGTTACTAATTTGGAACTATACCAAGAACGAGATGGTATTATCAATGCGAAGATAAAGAATGTTGCCTTAGGAG
Seq A exon
GTTGGAGTGCAGTGGCGTGATCTCGGCTCACTGTACCCTCTGCCTCCTAAGTTCAAGCGATTCTCCTGCCTCAGCTTCCCGAGTAGCTGGGACTACAG
Seq C2 exon
GCATAGTTACACCAAAAGTGATCTATGAGGAAGCAACTGACCTAGACAAATTCATCACCAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168778-'23-21,'23-20,24-21
Average complexity
S
Mappability confidence:
100%=75=75%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.130
Domain overlap (PFAM):
C1:
PF077736=DUF1619=PD(26.0=93.8)
A:
NO
C2:
PF077736=DUF1619=FE(8.0=100)
Main Inclusion Isoform:
ENST00000303372fB27790
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGCAGAACGCCCCAGTG
R:
TGTCTAGGTCAGTTGCTTCCTCA
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains