HsaEX1040407 @ hg38
Exon Skipping
Gene
ENSG00000109927 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr11:121125302-121128344:+
Coord C1 exon
chr11:121125302-121125872
Coord A exon
chr11:121126064-121126164
Coord C2 exon
chr11:121127752-121128344
Length
101 bp
Sequences
Splice sites
3' ss Seq
CCACCTAATACCACAACCAGGAA
3' ss Score
2.9
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
ATCTACTGCCGTGGAAACAGATTTTGGGCTCTTAGTGACTTTTGATGGCCAGCACTACGCCTCCATTTCCGTCCCAGGCTCCTATATAAACTCCACCTGTGGACTCTGTGGAAACTATAATAAAAACCCACTGGATGACTTCCTCCGCCCGGATGGCAGGCCGGCCATGTCTGTCCTGGATCTGGGAGAGAGCTGGCGTGTGTACCACGCAGACTGGAAGTGCGACTCCGGCTGCGTCGACAACTGCACCCAGTGCGACGCTGCCACTGAAGCCCTCTACTTTGGCTCTGACTACTGCGGCTTCCTCAACAAGACAGACGGCCCTCTGTGGGAGTGTGGCACTGTCGTGGACCCCACTGCTTTTGTGCACAGCTGCGTGTATGACCTGTGCAGTGTGAGGGACAATGGCACGCTCCTCTGCCAAGCCATCCAGGCCTATGCTCTTGTGTGCCAAGCCCTTGGCATTCCAATTGGAGACTGGCGAACCCAGACTGGGTGTG
Seq A exon
GAAACAAGAACCCATTGATGAACATACATGGTCTGGAAACATGAAAGGCATGGCAGGAAGTCCCACAGCAGGGGACGGCAGCTCCAGAGTTGAGTGAGGAG
Seq C2 exon
TGTCCACAGTGCAGTGCCCGAGCTTCAGCCACTACTCCGTGTGCACAAGCAGCTGCCCCGACACATGCTCCGACCTGACGGCCTCGCGGAACTGCGCCACGCCGTGCACAGAGGGCTGCGAGTGCAACCAGGGCTTCGTCCTCAGCACCAGCCAGTGCGTCCCTCTGCACAAGTGCGGCTGCGACTTCGACGGCCACTACTACACCATGGGGGAGTTCTTCTGGGCCACGGCCAACTGCACTGTGCAATGCCTGTGCGAGGAGGGCGGGGACGTCTACTGCTTCAACAAGACCTGCGGCAGCGGGGAGGTGTGCGCCGTGGAGGACGGCTACCAGGGCTGCTTCCCCAAGCGGGAGACCGTGTGCCTGCTCAGCCAGAACCAGGTGCTGCACACCTTTGACGGCGCCTCCTACGCCTTCCCCTCCGAGTTCTCCTACACCCTCCTGAAGACCTGCCCTGAGCGCCCAGAGTACTTGGAAATCGACATCAACAAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109927_MULTIEX1-2/4=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
A:
PF087426=C8=PD(0.1=0.0)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.8),PF0009420=VWD=PU(49.4=38.4)
Main Inclusion Isoform:
ENST00000392793fB27839
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTACTGCGGCTTCCTCAAC
R:
CACACGGAGTAGTGGCTGAAG
Band lengths:
254-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains