HsaEX1040577 @ hg38
Exon Skipping
Gene
ENSG00000198176 | TFDP1
Description
transcription factor Dp-1 [Source:HGNC Symbol;Acc:HGNC:11749]
Coordinates
chr13:113637818-113641470:+
Coord C1 exon
chr13:113637818-113637884
Coord A exon
chr13:113639176-113639235
Coord C2 exon
chr13:113640120-113641470
Length
60 bp
Sequences
Splice sites
3' ss Seq
CGGTTCTCCTTCTGTTGTAGCTA
3' ss Score
9.11
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
AAATGGCTCAGGGAACTGTTGGAGGCGTGTTCATCACGACGGCAGGTTCCACGTCTAACGGCACAAG
Seq A exon
CTATGTGTGAACGTGTGGCGGTCAGTCTGTAAACATGTTTAATGCTGCTTCTTCCATGAG
Seq C2 exon
TGACCTGACCAACGGTGCAGATGGGATGCTGGCCACAAGCTCCAATGGGTCTCAGTACAGCGGCTCCAGGGTGGAGACTCCGGTGTCCTACGTCGGGGAGGACGACGAGGAGGACGATGACTTCAACGAGAATGACGAGGACGACTGACGTCCTCCCCACTTCAGATTCGGCTTCAGGAAAACGTTTAGCGAAAAGAAACTTTTTTTTTAATGTGGGTTTTCTGTTTCCTTTTGGCCTACTCCCAAGAAGATATTGGTAAGCTATTGAATTTAGATATGCACCTCTGATAAGCAAGGATTGTTTCCCGTAGGATTAGGACGTGCTGTGGATGTGTGTTTTGATACCAGTGTGCTGATGCAGAGCGTTTATTTACTTGTTAGGATTTTGTGTTTTCATTTGCTATTTTTCTTTAAGTGCAGAGTTCATTTTTGCCCCTGAAAAGTTTTTGCTGAGTTTGCTGAAGAAATTGTATTTCAACCACATCCATGAAAATAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198176_MULTIEX2-4/6=3-6
Average complexity
C2
Mappability confidence:
95%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.000 C2=0.811
Domain overlap (PFAM):
C1:
PF087815=DP=PD(5.5=29.6)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000375370fB27943
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGTTGGAGGCGTGTTCA
R:
GTAGGACACCGGAGTCTCCAC
Band lengths:
146-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains