HsaEX1040767 @ hg38
Exon Skipping
Gene
ENSG00000156299 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr21:31202908-31210215:-
Coord C1 exon
chr21:31210045-31210215
Coord A exon
chr21:31208869-31208918
Coord C2 exon
chr21:31202908-31203012
Length
50 bp
Sequences
Splice sites
3' ss Seq
TCACAATTTTATCCTAGAAGAAG
3' ss Score
-0.69
5' ss Seq
AATGTTTGT
5' ss Score
-4.1
Exon sequences
Seq C1 exon
AGGGAGAAAGAAGTGGTCTTACCTAACGTTCACCAGCACAACCCTGACTGCGACATTTGGGTCCACGAGTATTTCACTCCATCCTGGTTCTGTCTGCCCAATAATCAGCCTGCCCTGACGGTCGTCCGGCCAGGCGACACTGCACGGGACACCCTGGAGCTGATTTGCAAG
Seq A exon
AAGTTGGATGGATGAAATGACGTTTTAAAGATCTCATCATTCAACACAAT
Seq C2 exon
ACACATCAACTGGATCATTCTGCTCATTACCTGCGCCTGAAATTTCTAATAGAAAACAAAATGCAGCTCTATGTTCCACAGCCCGAGGAAGACATCTATGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156299_MULTIEX4-1/4=C1-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
PF0219610=RBD=PU(45.6=54.4)
A:
PF0219610=RBD=PD(5.7=40.0)
C2:
PF0219610=RBD=FE(50.0=100)
Main Inclusion Isoform:
ENST00000286827fB28060
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGTTCTGTCTGCCCAAT
R:
ATTTCAGGCGCAGGTAATGAG
Band lengths:
133-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains