HsaEX1040876 @ hg38
Exon Skipping
Gene
ENSG00000146872 | TLK2
Description
tousled like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr17:62507192-62508553:+
Coord C1 exon
chr17:62507192-62507292
Coord A exon
chr17:62507381-62507434
Coord C2 exon
chr17:62508408-62508553
Length
54 bp
Sequences
Splice sites
3' ss Seq
CACATCTGTTTCACTTCTAGGAA
3' ss Score
11.45
5' ss Seq
CTGGTATGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
TGAACCCAGGAGGCAGAGGTTGCGGTCAGCCGAGATCGTGCCATTGTACTCCAGCCTGGGCAAAAGAGCAAAACTTTGTCTCAAAAAAAGAAAAAAAAAAG
Seq A exon
GAATGCTGCAAGGTCTCTGGGAGTCAAACTATTTTGATGGCTATTTTGACTCTG
Seq C2 exon
GAAAACTAGAAAAGAGGAGGAAAAAACAATAAATATGCAAGAAGAAATAAATACATTGCAAAACAGAAGAATGGGAAATAATCAAGAGTTGGAAAATTAGGAAACAAAAGGCAAAATGAAGGAGAGTACATCGGATATAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146872-'14-20,'14-19,15-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.864 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000326270fB28133
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTCCAGCCTGGGCAAAAG
R:
TCCCATTCTTCTGTTTTGCAATGT
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains