HsaEX1041389 @ hg38
Exon Skipping
Gene
ENSG00000137648 | TMPRSS4
Description
transmembrane protease, serine 4 [Source:HGNC Symbol;Acc:HGNC:11878]
Coordinates
chr11:118117305-118125608:+
Coord C1 exon
chr11:118117305-118117454
Coord A exon
chr11:118117902-118117931
Coord C2 exon
chr11:118125295-118125608
Length
30 bp
Sequences
Splice sites
3' ss Seq
ATCGGTCTCTCTTATTCTAGGCT
3' ss Score
9.12
5' ss Seq
GCAGTGCTG
5' ss Score
-11.52
Exon sequences
Seq C1 exon
GGTGACAGTGGTGGGCCCCTGATGTACCAATCTGACCAGTGGCATGTGGTGGGCATCGTTAGTTGGGGCTATGGCTGCGGGGGCCCGAGCACCCCAGGAGTATACACCAAGGTCTCAGCCTATCTCAACTGGATCTACAATGTCTGGAAG
Seq A exon
GCTGAGCTGTAATGCTGCTGCCCCTTTGCA
Seq C2 exon
GATAGAACTATTCAGAGAAGCTGTAACTCCCCAGGGACAGGTCTTGTGATTCAGCAACCAGCTGTACCGCTGATGGAGCTACGGTCAGCTCGGCACACACATCGCCTGACCACCTGTGTTTGCTTTCTCTCATTCCCTGCCTTACAGCCCCTGTCCCCCTTATGCCCATTTCCCTGGGATTGAACCCCCAAATAAAGTGTTAAGATATGAATTTAATGTAGAAAACTTAAGTTTTCTGAGAAACCTGGGCTAAGACTATCAAACAGATGTAGCTCTTTGATTATAACGTTATTAAGTTCTAAGGCAATAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137648_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(19.6=88.0)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCACCCCAGGAGTATACA
R:
ATCACAAGACCTGTCCCTGGG
Band lengths:
115-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains