HsaEX1041400 @ hg38
Exon Skipping
Gene
ENSG00000178297 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr19:2421854-2424257:+
Coord C1 exon
chr19:2421854-2422247
Coord A exon
chr19:2422860-2423565
Coord C2 exon
chr19:2424089-2424257
Length
706 bp
Sequences
Splice sites
3' ss Seq
ATCGTGCCATTGCACTCCAGCCT
3' ss Score
3.27
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTGACTCTGGGGGCCCCCTGGCCTGCGAGGAGGCCCCTGGCGTGTTTTATCTGGCAGGGATCGTGAGCTGGGGTATTGGCTGCGCTCAGGTTAAGAAGCCGGGCGTGTACACGCGCATCACCAGGCTAAAGGGCTGGATCCTGGAGATCATGTCCTCCCAGCCCCTTCCCATGTCTCCCCCCTCGACCACAAGGATGCTGGCCACCACCAGCCCCAGGACGACAGCTGGCCTCACAGTCCCGGGGGCCACACCCAGCAGACCCACCCCTGGGGCTGCCAGCAGGGTGACGGGCCAACCTGCCAACTCAACCTTATCTGCCGTGAGCACCACTGCTAGGGGACAGACGCCATTTCCAGACGCCCCGGAGGCCACCACACACACCCAGCTACCAG
Seq A exon
CCTGGGCAACAGAGTGAGACTCCAGCTAGATAATAGTAATAAAAATAAAAAGCCAGGCGTGATGGTGCATGCCTGTGGTTCCAGCTACTGGGGAGGCTGAGACAGGAGAATCATTTGAGCTCAGGAAGCAGAGGCTGCAGTGAGCCGAGATCATGCCATTATACTCCAGCCTGGGTGACACAGCCTGTCTCTAAAAAAATTAAAAAAAAAAAAAAAAATGAAAGCAGGGACTTTGATGGTTCACAGCTGTGCCATGTCCTTGGGTGCGTGTTTCTTGCTAACTTGGCAGCTGCCCTCATGTAGGTCTGTCCCTGCAGCCTGGGGGCTCTCACTTTCTCAGTCTCAGCTGATTTTGACTTTTTCAATAGCTATGGCGTGGGATCTCTTTGGGCCCAAAAGAGGTGGAGAAGGCCCCCCTCAAAATACAGGCGGGTTCTGTGTGGAGGTAGCTGGTGTTCCCAAGGACAGCGGCTGCGGCTGCTGTCAGATTATCCAAGGCCACCTGGTCTTATGTCAGGGCCAGACGGTGCCAAGGCTGGTGGGGAACTGGCATTTCCCCTTACTGGCCTTGGTAGCTGCTGCGGGTTGGATGGCGGTTGGTGGGGGGTGGGGGGCGGGGGGGACCCAGGGAAGCCAGCTGGGTGGTGATAGAGGGCGGCGGGGGGGCTTGCCCCTGAGGAGGAAAACACGCCTCTGGAGACAGCAG
Seq C2 exon
ACTGTGGCCTGGCGCCGGCCGCGCTCACCAGGATTGTGGGCGGCAGCGCAGCGGGCCGTGGGGAGTGGCCGTGGCAGGTGAGCCTGTGGCTGCGGCGCCGGGAACACCGTTGCGGGGCCGTGCTGGTGGCAGAGAGGTGGCTGCTGTCGGCGGCGCACTGCTTCGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178297_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=1.000 C2=0.074
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.2=34.8)
A:
NO
C2:
PF0008921=Trypsin=PU(19.8=78.9)
Main Inclusion Isoform:
ENST00000332578fB28443
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAAGAAGCCGGGCGTGTAC
R:
GCCCACAATCCTGGTGAGC
Band lengths:
345-1051
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains