HsaEX1041763 @ hg38
Exon Skipping
Gene
ENSG00000132958 | TPTE2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:HGNC Symbol;Acc:HGNC:17299]
Coordinates
chr13:19503224-19552673:-
Coord C1 exon
chr13:19552571-19552673
Coord A exon
chr13:19505747-19505938
Coord C2 exon
chr13:19503224-19503277
Length
192 bp
Sequences
Splice sites
3' ss Seq
CTTCTATTTTTTTTTTTCAGACC
3' ss Score
11.08
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTAGCCACAGTCAATGAACAACCCCTTCAGAATGGCTTTGAAGAGCTGATCCTGTGGACAAAAGAGGGGAAACTGTGGGAGTTCCCAGTTAACAATGAAGCAG
Seq A exon
ACCAAATTGGATAAAAGAGGACGAAGTCATGAAAGGGATGCTTCTTCCTCTTAGTATATTTGTCACTCTAAGTTGGTGGTATCCAATCCCTTAGGAACGAACCTCTGAGGTTTTCCATTTATGAGACTCTCCTACTACTAGAGTGGGCCAAAGGGAGAGAGAATCCTATTTGGAGCAATGAGGAGGTAACAG
Seq C2 exon
TCCACCCACAAATGAATTATCAGGAGTGAACCCAGAGGCACGTATGAATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132958_MULTIEX1-3/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACAGTCAATGAACAACCC
R:
TTTCATTCATACGTGCCTCTGGG
Band lengths:
154-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains