HsaEX1042815 @ hg38
Exon Skipping
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:170040882-170055584:+
Coord C1 exon
chr2:170040882-170040985
Coord A exon
chr2:170053819-170054004
Coord C2 exon
chr2:170055460-170055584
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGGTAGTATCCATTTACTAGGGG
3' ss Score
2.86
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
GCTGGGATATGAAGAACAACAGCCTGAGGTTCCAATTCTTTATCATGATGTAACATCCCTTTTGCTCATCCAGATCTTAATGATGCCACAACCCTTACGCAAAG
Seq A exon
GGGAGGAGTATAATATAATAGAAGGAACACTGAACCTGAAGAAAAATGATCTATATGGATTCAAGTTCAGACCTGGGTGCTTATTAGCTTTGATATCACAAGCACATCTTTCTGAAGCTCAGTTATCCTGTTGAGACTGTTTTGAGGATTGAATGAGACACTTGAAGAAAATTGCTAAGTTATTAG
Seq C2 exon
ACCACTTTACCTGCATTGTGAAGGTACTTTTTACCCTACTGTACACACAGGCTCTTGCAGCACTCTCAGTTAAATGCAGCGAAGAAGATAGGTCAGCCTGGAAACACGCGGGAGCTCTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000272793fB29261
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGATATGAAGAACAACAGC
R:
CTTTTTGAGAGCTCCCGCGT
Band lengths:
229-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains