HsaEX1043202 @ hg38
Exon Skipping
Gene
ENSG00000077254 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr1:77718596-77721205:-
Coord C1 exon
chr1:77721172-77721205
Coord A exon
chr1:77720262-77720586
Coord C2 exon
chr1:77718596-77718641
Length
325 bp
Sequences
Splice sites
3' ss Seq
CTTCTCAATCTCTGTAATAGGAA
3' ss Score
8.02
5' ss Seq
AATGTATAT
5' ss Score
-0.21
Exon sequences
Seq C1 exon
GTGACAATATGTACAGTTGTGAAAAATGCAAAAA
Seq A exon
GAATGCAACGGCTTGCTAATAAGATCTGGGATAATACAGACTTCTAGTTCTTGGCAGTAACCTAAAGGAAACATTGATCTGCAACTGATCATGACATGACAGAAAGGAATGGTATACTATTTGGTTGATAAAGATGAAAAAGCTGACTTCTACTTTTGGAGAAAGTATCACTTTGTTCTTGAAGCCCTAGCTGACTGCTGAAAAGGAAGTTGGCTTGGAAGGGGATTGTTCCTTGTAAAGCAAAGCATACTAAGAAAAAGATAACAGTGAAGATGGAAAAGAACCTTGCATCTACCTCCATATTCAAAGTAGAGATCTGTCAAAT
Seq C2 exon
GTTGAGAAATGGAGTGAAGTTTTGTAAAGTACAAAACTTTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077254_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=PU(7.8=83.3)
A:
NO
C2:
PF0044324=UCH=FE(11.7=100)
Main Inclusion Isoform:
ENST00000370793fB29542
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains