HsaEX1043424 @ hg38
Exon Skipping
Gene
ENSG00000038427 | VCAN
Description
versican [Source:HGNC Symbol;Acc:HGNC:2464]
Coordinates
chr5:83471465-83483588:+
Coord C1 exon
chr5:83471465-83472023
Coord A exon
chr5:83482297-83482479
Coord C2 exon
chr5:83483513-83483588
Length
183 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTGTTCTCTTCTCAGGAT
3' ss Score
11.02
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
CTGGGGAGGGAGGCAGGCGGTCCCTACCGCAGGCGCGGGGAGCTGCCTTTCCGCCCCTCCGCCTGCTTTCCAAGCCTGGACTCTTAGGAGTGGCTGAAGCTGCGGAGCGCTTTTGGAGCCTGTGAATGAACCCTCCTCCTCTCCCTCCTCCTTCTTCTCGCTGAGTCTCCTCCTCGGCTCTGACGGTACAGTGATATAATGATGATGGGTGTCACAACCCGCATTTGAACTTGCAGGCGAGCTGCCCCGAGCCTTTCTGGGGAAGAACTCCAGGCGTGCGGACGCAACAGCCGAGAACATTAGGTGTTGTGGACAGGAGCTGGGACCAAGATCTTCGGCCAGCCCCGCATCCTCCCGCATCTTCCAGCACCGTCCCGCACCCTCCGCATCCTTCCCCGGGCCACCACGCTTCCTATGTGACCCGCCTGGGCAACGCCGAACCCAGTCGCGCAGCGCTGCAGTGAATTTTCCCCCCAAACTGCAATAAGCCGCCTTCCAAG
Seq A exon
GATGAATCTATCTTTCCCAGGGACCCTTCACTGGAGGAAGAGATCCCCTCACATCTCACTGGCCAAAACTATATTATATACTGTTCCAAATCCAATCATTGGAAAAGGGAATGGTACCTCTATAATTGACTTAGGATATCAAGATCATCCCTTGGGCTGGGGTTTGACCCAGGATTCTCCAAA
Seq C2 exon
GCCAAGATGTTCATAAATATAAAGAGCATCTTATGGATGTGTTCAACCTTAATAGTAACCCATGCGCTACATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000038427_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0768612=V-set=PU(0.8=4.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGCTGGGACCAAGATCT
R:
AGCGCATGGGTTACTATTAAGGT
Band lengths:
255-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains