HsaEX1043918 @ hg38
Exon Skipping
Gene
ENSG00000196363 | WDR5
Description
WD repeat domain 5 [Source:HGNC Symbol;Acc:HGNC:12757]
Coordinates
chr9:134151983-134154541:+
Coord C1 exon
chr9:134151983-134152029
Coord A exon
chr9:134153615-134153680
Coord C2 exon
chr9:134154466-134154541
Length
66 bp
Sequences
Splice sites
3' ss Seq
CGTCTCCCGTGCCTTTTCAGTGT
3' ss Score
10.66
5' ss Seq
GTGGTAATG
5' ss Score
4.46
Exon sequences
Seq C1 exon
TCGCATCTGGGACACCGCCTCAGGCCAGTGCCTGAAGACGCTCATCG
Seq A exon
TGTATGTGACCGGGCTGAGGGAGCGGAGACGCCAGGTGCCTGGCGAGGCCAGGCGTCCCCGTGGTG
Seq C2 exon
ATGACGACAACCCCCCCGTGTCTTTTGTGAAGTTCTCCCCGAACGGCAAATACATCCTGGCCGCCACGCTGGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196363_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.522 C2=0.077
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(10.3=23.5),PF0040027=WD40=PU(20.0=47.1)
A:
PF0040027=WD40=PU(0.1=0.0)
C2:
PF0040027=WD40=PU(78.1=96.2)
Main Inclusion Isoform:
ENST00000358625fB30047
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGGGACACCGCCTCAG
R:
GTGGCGGCCAGGATGTATTTG
Band lengths:
111-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains