HsaEX1044768 @ hg38
Exon Skipping
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger MYM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:12989]
Coordinates
chr13:20019547-20026762:+
Coord C1 exon
chr13:20019547-20019618
Coord A exon
chr13:20025226-20025375
Coord C2 exon
chr13:20026612-20026762
Length
150 bp
Sequences
Splice sites
3' ss Seq
TATATTTTCATATTGTATAGATG
3' ss Score
6.48
5' ss Seq
AAGGCTAGC
5' ss Score
-2.14
Exon sequences
Seq C1 exon
GTAGGTAGCCATCCAAGCTTCCTGAAGGAGGTTCGAGATCACATGCAGGACTCTTTCTTAATGCAGCCTGAG
Seq A exon
ATGCTCGTGGGTATGAAGACGGATTTAATTGCAACATGAGGTGGAAAATGGATACAATTATTTTGCAACGTGATTTGTGATATTTGATTTAACTTGACTATGACAGAGTTCTGCAACCACTCAGAGGATCAAAACAACTTGCACTTGAAG
Seq C2 exon
AAATATGGAAAACTGACAACTTGTACTGGTTGCCGAACACAGTGCAGGTTTTTTGATATGACTCAGTGTATAGGTCCTAATGGATATATGGAGCCATATTGTTCAACTGCTTGTATGAACAGTCACAAGACAAAATATGCAAAATCACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741_MULTIEX5-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(0.1=0.0)
A:
NO
C2:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(7.3=5.9)
Main Inclusion Isoform:
ENST00000382871fB30568
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGCCATCCAAGCTTCCTG
R:
TGTGATTTTGCATATTTTGTCTTGTG
Band lengths:
218-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains