HsaEX1044779 @ hg38
Exon Skipping
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger MYM-type containing 6 [Source:HGNC Symbol;Acc:HGNC:13050]
Coordinates
chr1:35020383-35030713:-
Coord C1 exon
chr1:35030547-35030713
Coord A exon
chr1:35026731-35026896
Coord C2 exon
chr1:35020383-35020467
Length
166 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCATTGACACACTAGACT
3' ss Score
1.45
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
Exon sequences
Seq C1 exon
GTGTCCAACTATCCATTACCAAGAAGAAATCTATTCGTTTGAGCCTGAGACACTCTTTGAGGTAAAAAATTAGAATGAAAGAACCTTTGGATGGTGAATGTGGCAAAGCAGTGGTACCACAGCAGGAGCTTCTGGACAAAATTAAAGAAGAACCAGACAATGCTCAA
Seq A exon
ACTGCAGTCTCTCTGAAGTCAGAAATTGGTCTTATTGACCTGAATCTCCAATTCCTAGCACAGGATTTGGCACAAAGTACATGTTCAATAATTGGAATAAAAGAGCCTCTTTCACATATAAGGAAGCTGAACCTGAAGGAATAAGTGACTTCACCAGTGTCTCATG
Seq C2 exon
GAGTATGGATGTGTCCAACAGCCAAAAACTCAAGAAAGTAAATTGAAAATTGGTGGTGTGTCTTCAGTTAATGAGAGACCTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867_MULTIEX1-3/9=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=0.000 C2=0.316
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000357182fB30577
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCAACTATCCATTACCAAGA
R:
CTCATTAACTGAAGACACACCACCA
Band lengths:
242-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains