HsaEX1044832 @ hg38
Exon Skipping
Gene
ENSG00000163848 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
Coordinates
chr3:125223759-125234329:-
Coord C1 exon
chr3:125234211-125234329
Coord A exon
chr3:125233256-125233939
Coord C2 exon
chr3:125223759-125232654
Length
684 bp
Sequences
Splice sites
3' ss Seq
CCATCCTCTGAATTCAACAGTAT
3' ss Score
5.22
5' ss Seq
AATGTGGGT
5' ss Score
2.76
Exon sequences
Seq C1 exon
GTGAAAAACCATTTCGCTGTGATGAATGTGGTATGAGATTCATACAAAAATATCATATGGAAAGGCATAAGAGAACTCATAGTGGAGAAAAACCTTACCAGTGTGAATACTGTTTACAG
Seq A exon
TATTTTTCCAGAACAGATCGTGTATTGAAACATAAACGTATGTGCCATGAAAATCATGACAAAAAACTAAATAGATGTGCCATCAAAGGTGGCCTTCTGACATCTGAGGAAGATTCTGGCTTTTCTACATCACCAAAAGACAACTCACTGCCAAAAAAGAAAAGGCAGAAAACGGAGAAAAAATCATCTGGAATGGACAAAGAGAGTGCTTTGGACAAATCTGACCTGAAAAAAGACAAAAATGATTACTTGCCTCTTTATTCTTCAAGTACTAAAGTAAAAGATGAGTATATGGTTGCAGAATATGCTGTTGAAATGCCACATTCGTCAGTTGGGGGCTCGCATTTAGAAGATGCGTCAGGAGAAATACACCCACCTAAGTTAGTTCTCAAAAAAATTAATAGTAAGAGAAGTCTGAAACAGCCACTGGAGCAAAATCAAACAATTTCACCTTTATCCACATATGAAGAGAGCAAAGTTTCAAAGTATGCTTTTGAACTTGTGGATAAACAGGCTTTACTGGACTCAGAAGGCAATGCTGACATTGATCAGGTTGATAATTTGCAGGAGGGGCCCAGTAAACCTGTGCATAGTAGTACTAATTATGATGATGCCATGCAGTTTTTGAAGAAGAAGCGGTATCTTCAAGCAGCAAGTAACAACAGCAGGGAATATGCGCTGAAT
Seq C2 exon
GTGATGAGACAAACCATGCTTCTGCCACATCAACACAGGACTTTCTGGATCAAGTGACTTCTCAGAAGAAAGCTGAGGCCCAGCCTGTCCACCAAGCTTACCAAATGAGCTCCTTTGAACAGCCCTTCCGTGCTCCCTATCATGGATCAAGAGCTGGAATAGCTACTCAATTTAGCACTGCCAATGGACAGGTGAACCTTCGGGGACCAGGGACAAGTGCTGAATTTTCAGAATTTCCCTTGGTGAATGTAAATGATAATAGAGCTGGGATGACATCTTCACCTGATGCCACAACTGGCCAGACTTTTGGCTAAAAAAAAAAAAAAAGTGTAAATAATACTGGCACTTTAGAACAGATTAATCAAGAGTGGGGTTACTCTGTGTAAATGGAGTGCTGTACAGATTTAAGAGCAATGCGTAATAACAAGTTAAGCTGATATGAATAGCAAGATAATCCAATAACTGCATTTCGTTTGGTTAGTCAGCATTCTTTGAACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163848_MULTIEX1-13/13=12-C2
Average complexity
S*
Mappability confidence:
93%=93=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=0.592 C2=0.894
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
A:
PF134651=zf-H2C2_2=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=PD(19.2=4.8)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAAAACCTTACCAGTGTGA
R:
CCAAAAGTCTGGCCAGTTGTG
Band lengths:
347-1031
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains