HsaEX1044851 @ hg38
Exon Skipping
Gene
ENSG00000096654 | ZNF184
Description
zinc finger protein 184 [Source:HGNC Symbol;Acc:HGNC:12975]
Coordinates
chr6:27450820-27456921:-
Coord C1 exon
chr6:27456826-27456921
Coord A exon
chr6:27455841-27455907
Coord C2 exon
chr6:27450820-27453260
Length
67 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTTCTAAATCATCAGTTT
3' ss Score
5.52
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GACTCCAAGTTTCTAAACCTGATGTGATTTCCCAGTTAGAGCAAGGGACAGAGCCATGGATCATGGAGCCAAGCATTCCAGTAGGTACCTGTGCAG
Seq A exon
TTTCCAAACTGCATGAAGTAACCTAAGGATCTGACCCTGGAAAAACAAACAAACCTAGTCATTCTAG
Seq C2 exon
ACTGGGAGACAAGACTTGAAAATAGTGTGTCAGCCCCAGAGCCTGACATTTCTGAAGAAGAGCTATCTCCAGAGGTAATAGTGGAAAAACACAAAAGAGATGATTCTTGGAGTTCCAACTTGCTAGAAAGTTGGGAATATGAAGGCAGTTTAGAGAGACAGCAGGCAAACCAACAGACACTGCCAAAGGAAATAAAGGTAACCGAAAAGACAATACCCAGTTGGGAAAAAGGCCCTGTAAATAATGAATTTGGGAAAAGTGTCAATGTGAGTTCAAACCTTGTAACACAAGAACCATCTCCAGAAGAGACCTCTACTAAAAGAAGCATCAAACAGAATTCAAACCCAGTTAAAAAAGAGAAATCTTGTAAGTGCAATGAATGTGGGAAAGCCTTTAGTTATTGTTCAGCTCTTATTCGCCATCAGAGAACACATACTGGAGAAAAACCCTACAAATGTAATGAATGTGAAAAAGCCTTCAGCCGGAGTGAAAACCTTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096654_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.313 A=0.000 C2=0.219
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF0009621=zf-C2H2=WD(100=3.5)
Main Inclusion Isoform:
ENST00000377419fB30622
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGGAGCCAAGCATTCCAG
R:
ACTTTCTAGCAAGTTGGAACTCCA
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains