HsaEX1044853 @ hg38
Exon Skipping
Gene
ENSG00000096654 | ZNF184
Description
zinc finger protein 184 [Source:HGNC Symbol;Acc:HGNC:12975]
Coordinates
chr6:27457283-27467920:-
Coord C1 exon
chr6:27467853-27467920
Coord A exon
chr6:27466836-27467026
Coord C2 exon
chr6:27457283-27457409
Length
191 bp
Sequences
Splice sites
3' ss Seq
GATTAACAGATGTTACACAGGAT
3' ss Score
-1.14
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
ATCTGTCCTCTCCAGACTCCACCCTTCTCCAAGGGGGACATAATCTACTCTCATCAGCCAGTTTTCAG
Seq A exon
GATTCAGAAAAATTTGGAAGAGATGGATTATGGCAAGTGGTACACAAATGATTGAATGAAGTCAGAATATGAAAGCCTTGAATACCTGGATGAGAAGTTGAAGGCTTTATTGTGTAGGCCATTTATGAACCATTAATGATTTTTAATGGAAGAAAAGTGACCTGGACTGATTGAGAACTTAGACAAAAAAG
Seq C2 exon
GAAGCGGTGACTTTCAAGGATGTGATAGTGGACTTTACCCAGGAAGAATGGAAACAGCTGGACCCTGGCCAGAGAGATTTGTTCAGGGATGTGACATTGGAAAATTATACACACCTGGTCTCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096654_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENST00000211936fB30623
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCTCTCCAGACTCCACC
R:
AGAGACCAGGTGTGTATAATTTTCCA
Band lengths:
189-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains