HsaEX1044856 @ hg38
Exon Skipping
Gene
ENSG00000157429 | ZNF19
Description
zinc finger protein 19 [Source:HGNC Symbol;Acc:HGNC:12981]
Coordinates
chr16:71484589-71489338:-
Coord C1 exon
chr16:71489272-71489338
Coord A exon
chr16:71487080-71487410
Coord C2 exon
chr16:71484589-71484748
Length
331 bp
Sequences
Splice sites
3' ss Seq
ATTGGCTAACAGTTCCACAGGCT
3' ss Score
0.35
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ACTTCCGGCCTCCTAACCGTTCTCGCTAGCGGTGCGCTTCTGGCCTGTTTTGAGTCCGCGCTCAAAG
Seq A exon
GCTGTACAGGAGGCATGGCTGGGGAGGCCTCAGGATACTTACAATCATGGTGGAAAGCAAAGGGGAAGCAGGCACAATCTTCACATGGCCAGCAGGAGAGAGACAGCAAAGGAGGAAGCGCAACACACTTCGAAACAACCAGATCACATGAGAACTCACTATCACGAGAACAGCAAGGGGGAAATCCGCCCCCATGATCCAATCACCTTCCACCATGTTCCTCCCCCAACACTGAAGATCATAATTCAACATGAGATTTGCCTGGGGACACAGAGCCAAAACATATCAAGTATACATTTCCTTAGAGGTGATACATTGGCTGGGAAGACAG
Seq C2 exon
GTCTCTGAGGATCCCCGGGTGGAAACTCCTCCCGGGAGTAAAACCACACAACCACTGAGAAGACCGCTCCGGCATCCTAGAGAGTACGCGTGTGAGCCTGGGTGCAAGGCCAAAGTAGTGACGCACTTCCGTTCACGCACCGCTTTCTGTTTTTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157429_MULTIEX1-5/5=4-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCTCCTAACCGTTCTCG
R:
CTCAGGAAAAACAGAAAGCGGTG
Band lengths:
222-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains