HsaEX1044898 @ hg38
Exon Skipping
Gene
ENSG00000178386 | ZNF223
Description
zinc finger protein 223 [Source:HGNC Symbol;Acc:HGNC:13016]
Coordinates
chr19:44060749-44067991:+
Coord C1 exon
chr19:44060749-44060841
Coord A exon
chr19:44063265-44063566
Coord C2 exon
chr19:44066064-44067991
Length
302 bp
Sequences
Splice sites
3' ss Seq
CCGCTGTCGATTCCTTGCAGGAG
3' ss Score
8.48
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGCATCAACCATTCCACCGAGATACTTTCCACTTTCTAAGGGAGGAAAAGTTTTGGATGATGGATATAGCAACCCAAAGGGAAGGGAATTCAG
Seq A exon
GAGGGAGTGTGCAAGCGAGCAAGTGCAGGAACCGGAGCAAATGAATGCTGGAATTGGCTGGTCGCTCCTCTCTGGCGAGAGCAGGCTCTGTTATGCACGCCCCACAGCAGTGTCCAAGCATGTTACAACCCATGCTGTTTCAGCTCTGCCATCTGGGGATGGCCAAGTGCCAATCAGCTCAGTGGAGCATCAGGGTAGCAGCCCCTGCCCTCTTGGCACCTGGGTTCTTGTCCAGCATCCAGGAAGAACCAGGTCACATGAACTGTGTGAAAGGTGATGAACGCAGAAGACTTTATTGAGTG
Seq C2 exon
GAGGCAAGATCCAACCTGAGATGAAGACTTTTCCAGAAGCAGGACCACATGAAGGGTGGTCCTGCCAGCAGATCTGGGAAGAAATTGCAAGTGATTTAACCAGGCCTCAAGACTCTACCATAAAGAGCTCTCAGTTCTTTGAACAGGGTGATGCCCACTCCCAGGTTGAGGAAGGACTATCTATAATGCACACAGGACAGAAACCTTCCAATTGTGGGAAGTGTAAACAATCCTTCAGTGATATGTCCATCTTTGATCTTCCTCAGCAAATACGCTCAGCAGAGAAGTCTCATTCCTGTGATGAGTGTGGAAAAAGCTTCTGTTACATCTCAGCGCTTCATATTCATCAGAGAGTCCACCTGGGAGAGAAACTCTTTAAGTGTGACGTGTGTGGTAAGGAATTCAGTCAGAGTTTACATCTGCAAACTCATCAGAGAGTCCATACTGGAGAGAAACCTTTCAAATGTGAACAATGTGGGAGAGGCTTCAGATGTAGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178386_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=1.000 C2=0.088
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.7)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGAAAAGTTTTGGATGATGG
R:
TGAGACTTCTCTGCTGAGCGT
Band lengths:
346-648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains