HsaEX1044906 @ hg38
Exon Skipping
Gene
ENSG00000167377 | ZNF23
Description
zinc finger protein 23 [Source:HGNC Symbol;Acc:HGNC:13023]
Coordinates
chr16:71456764-71462370:-
Coord C1 exon
chr16:71462210-71462370
Coord A exon
chr16:71461659-71462004
Coord C2 exon
chr16:71456764-71456828
Length
346 bp
Sequences
Splice sites
3' ss Seq
TGGTCTTTGTGGCTCAATAGCTT
3' ss Score
5.44
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GGGTAACAGTCACCGTGGGCCAGACCCGAGCTAGCCGACAGGGATGCGGCCACAGCTGGCCGGGCGTGACCACCACCGAGGCGCAGCGACCTTGCTCCTAGAGAGGCCCGGCCGCCTGGTGACGCACTTCCGGCAGCGCCGGGGAGCAGTCCGCTACGGAG
Seq A exon
CTTGCGCCCATTGGAAGGGGAAACGCACGTTGCTGTCCCAGCCACGAGGCCCTGAGCATTTAGCACTTGGTCGACGGGGGAAGATGTGTCGGTGCAGCTAAAAGATGGAATATTTGCGGGCGTGAAGCGGCCCGAGGTGATACCACAAGTCTTTTGACATGCTGAGGTCTGGCAGGAACATTAACCTATGTGCATCCCGAGTATGGACCGTGTGCTCCCAGGCTCCTGACATAGGGTCATGAATTAGGGCCGAGTGGGAGCGCAGAGCCCCTCCCAGTCACCCGGCAGCAGAAGCAGCCCGGCTTTTGGAGGACATTGTCTCCTGGAGCAGTGTCAGTCCCAAAAG
Seq C2 exon
CTCCAGCCCTTCTCTGAGACGGGGACCAGGGGATGGCAGCCATGCACCTGACAGCCTGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167377_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACAGTCACCGTGGGCCAG
R:
CTGGGGCCAGGCTGTCAG
Band lengths:
223-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains