HsaEX1044922 @ hg38
Exon Skipping
Gene
ENSG00000175395 | ZNF25
Description
zinc finger protein 25 [Source:HGNC Symbol;Acc:HGNC:13043]
Coordinates
chr10:37873934-37953758:-
Coord C1 exon
chr10:37953695-37953758
Coord A exon
chr10:37952963-37953195
Coord C2 exon
chr10:37873934-37874010
Length
233 bp
Sequences
Splice sites
3' ss Seq
ATGTGGAACTTTCTGTCTAGGAA
3' ss Score
7.26
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
AAGACCTATGGAGCATTCATGATCTAGAAGCAAGATACCAGGAAAGCCAAGCTGGAAATTCAAG
Seq A exon
GAATGGAGAACTCACAAAACATCAGAAAACTCATACCACAGAGAAAGCCTGTGAATGTAAGGAATGTGGGAAGTTCTTCTGCCAGAAGTCTGCCCTCATAGTACATCAGCATACTCACTCAAAGGGCAAATCCTATGACTGTGATAAATGTGGGAAATCTTTCTCTAAAAATGAAGACCTCATAAGACATCAGAAAATTCACACGAGAGATAAAACCTATGAGTGTAAAGAAT
Seq C2 exon
GCTGGAGTGCAGTGGCTCGATCATAACTCACTGCAGCCTTGAACTCCTGGGCTCAAGCAGTCCTCTTGCCTCAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175395_MULTIEX2-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.128 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=6.7),PF0009621=zf-C2H2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTATGGAGCATTCATGATCT
R:
AGTCTGAGGCAAGAGGACTGC
Band lengths:
140-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains