HsaEX1044944 @ hg38
Exon Skipping
Gene
ENSG00000083844 | ZNF264
Description
zinc finger protein 264 [Source:HGNC Symbol;Acc:HGNC:13057]
Coordinates
chr19:57205397-57222846:+
Coord C1 exon
chr19:57205397-57205492
Coord A exon
chr19:57206110-57206189
Coord C2 exon
chr19:57211354-57222846
Length
80 bp
Sequences
Splice sites
3' ss Seq
CCCTCACATTCCACCCACAGGAA
3' ss Score
10.63
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
GGTGTCCTGTTCCCAAAGCTGAGCTGATCTGCCACCTAGAGCATGGGCAGGAGCCATGGACCAGGAAGGAAGACCTCTCCCAAGACACCTGTCCAG
Seq A exon
GAACTAGGCATTTGGCTTGGGTCCATGGGACTGGGAAATGTGGCTGAGCTGCTTGTCCAAGGAGAAGAGCAGAAGGTTTG
Seq C2 exon
GCGACAAAGGAAAACCTAAGACCACAGAACCTACCACTTGTGAGCCAGCCTTGTCAGAGGGAATCTCACTTCAGGGACAAGTGACACAAGGAAACTCAGTGGACTCACAGTTGGGGCAAGCCGAGGATCAGGATGGGCTATCAGAAATGCAGGAAGGACACTTCAGACCAGGAATAGATCCCCAGGAGAAGTCTCCTGGGAAGATGAGCCCTGAATGTGATGGTTTAGGGACAGCTGATGGTGTGTGTTCAAGGATTGGACAGGAGCAAGTCTCTCCAGGAGATAGAGTCCGTAGCCATAACTCATGTGAGTCAGGTAAAGATCCCATGATTCAGGAAGAGGAAAATAACTTTAAATGCAGTGAATGTGGAAAAGTATTTAACAAGAAACACCTCCTTGCTGGACATGAGAAAATTCACTCTGGAGTTAAGCCCTATGAATGCACAGAATGTGGGAAAACCTTTATTAAGAGCACACATCTCCTGCAACATCACATGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083844_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=0.000 C2=0.280
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.8)
Main Inclusion Isoform:
ENST00000263095fB30663
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTCTCCCAAGACACCTG
R:
ATAGCCCATCCTGATCCTCGG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains