HsaEX1044969 @ hg38
Exon Skipping
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr15:56827524-56890167:-
Coord C1 exon
chr15:56890014-56890167
Coord A exon
chr15:56847324-56847481
Coord C2 exon
chr15:56827524-56827651
Length
158 bp
Sequences
Splice sites
3' ss Seq
AAAATGTCAAAAAACAACAGGTG
3' ss Score
1.75
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AATCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGTGCAATCTCAAGCTCACTGCAACCTCTGTGCAGGTTCAAGTGGAGAATCTGAATCTTGATGATATAATTGGAACTCTTCAGCCAAGCCATATCTAACAGAACTATCTTCAACTTTTCAG
Seq A exon
GTGTTGGTGAGGATGCAGAGAAAAGGGAAACTCATACACTGCTGATGGGAATGCAAACCAGTACAACTTCTATGGAAAACGATATGGAGACTCTCAAAGAACTAAAAGCAGAACCATCATTCCGTCCAGCAATCCCACCACTGGTCATCTACCCAAAG
Seq C2 exon
TTTGGGTATCAAAAATATACTTACAAAAGAAGTAAAGAGAGCTCACCTATTTTTGTCTTCACTGAATGAAAAAGTCTGTTCAATACAGGAAATAAACTTTGAAGATTTGGTAAAACTCACCTCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAATCTCAAGCTCACTGCA
R:
CCAAAGAGGTGAGTTTTACCAAA
Band lengths:
247-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains