HsaEX1044985 @ hg38
Exon Skipping
Gene
ENSG00000145908 | ZNF300
Description
zinc finger protein 300 [Source:HGNC Symbol;Acc:HGNC:13091]
Coordinates
chr5:150903141-150903977:-
Coord C1 exon
chr5:150903864-150903977
Coord A exon
chr5:150903329-150903383
Coord C2 exon
chr5:150903141-150903182
Length
55 bp
Sequences
Splice sites
3' ss Seq
TCTATGTGATCATATTATAGGTA
3' ss Score
6.57
5' ss Seq
TCTGTAAGG
5' ss Score
4.7
Exon sequences
Seq C1 exon
ATGTTTTGATACCCCCATATAAAATAATCTGTCTGTCATGGGAGCCCCCACGTCCTCTGAAATAGTTCAGCTCTGTCTGCATGACTTGTCCTGGGACTGAGGAAAATTTACCAG
Seq A exon
GTACAAGAGGAGTAAAGAATGATCCCTCCTCCACATGGTGCCTGCTGAGACTTCT
Seq C2 exon
TCATCTGGCCTTTTGGAAGAGCAAAAAATGATGAAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145908_MULTIEX1-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.857 C2=0.349
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCCATATAAAATAATCTGTCTGT
R:
TTGCTCTTCCAAAAGGCCAGA
Band lengths:
128-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains