HsaEX1045003 @ hg38
Exon Skipping
Gene
ENSG00000181315 | ZNF322
Description
zinc finger protein 322 [Source:HGNC Symbol;Acc:HGNC:23640]
Coordinates
chr6:26632179-26635631:-
Coord C1 exon
chr6:26635566-26635631
Coord A exon
chr6:26635181-26635250
Coord C2 exon
chr6:26632179-26634627
Length
70 bp
Sequences
Splice sites
3' ss Seq
GGTTTGATTTGTCCTAGCAGATC
3' ss Score
6.23
5' ss Seq
TGTGTATGG
5' ss Score
0.13
Exon sequences
Seq C1 exon
TTCTGCCAAGGAAAGAGAAAATACCTTTTAATCCCAGGGAAAGGATTGCAATCACCACATTATAAG
Seq A exon
ATCCCTGAACTTCAGAGAGTATTGCCATTTGGATTCATGGAGTTGGCGAACTGCTACACTGCTACCTTGT
Seq C2 exon
CATAACCTGAGGTTGGAGAGGACCACTTGGGAGCCTGTAACCAAAACTAGAAGGTAACTTCTGGGATGGACGGAGGTTCCCTTGAAGCAGTGCCAACCTAAATCTACCTCAGGTAAGTAGTTAGATTAACTTTTTCAAGATTTCAGACCAAACAAGACAACTTGTATTCAGTTGATGTATTCCTATGCTTTAATGTTTTTGTTTGCCCTTAATTATTAAATAAACATTTGTTCTGAAAAACTCCATTTCCGTCTCCACTGTACTGAGAGAAACAGCATTTCCTCTACACTTGGATTAGAATGAAGTGGTTAATAATGTGATACTTAGACATGGAGGTAGAGATAACCACTGGACCATCTCTATAATTCCAGCAATTTTGGATGCCGAGGCAGAGAGGAACAGAAGGAATATTGTCTATGCTCCGCTGTGGACATTGCATCCTTTTGGAACCTCTGCACCACATTCCATAAATGGGGCTAATAGTTTGAACTGACCATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181315_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCCAAGGAAAGAGAAAATACCT
R:
TTAGGTTGGCACTGCTTCAAGG
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains